Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NPAS1Q99742 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.13■□□□□ 0.17
NPAS1Q99742 AC246785.2-201ENST00000432512 513 ntBASIC16.13■□□□□ 0.17
NPAS1Q99742 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.13■□□□□ 0.17
NPAS1Q99742 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.13■□□□□ 0.17
NPAS1Q99742 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.13■□□□□ 0.17
NPAS1Q99742 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.13■□□□□ 0.17
NPAS1Q99742 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.13■□□□□ 0.17
NPAS1Q99742 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.13■□□□□ 0.17
NPAS1Q99742 BNIP3P18-201ENST00000593976 575 ntBASIC16.13■□□□□ 0.17
NPAS1Q99742 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
NPAS1Q99742 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.13■□□□□ 0.17
NPAS1Q99742 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NPAS1Q99742 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
NPAS1Q99742 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.13■□□□□ 0.17
NPAS1Q99742 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.13■□□□□ 0.17
NPAS1Q99742 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.13■□□□□ 0.17
NPAS1Q99742 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.12■□□□□ 0.17
NPAS1Q99742 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.12■□□□□ 0.17
NPAS1Q99742 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
NPAS1Q99742 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 KRT18P56-201ENST00000507275 550 ntBASIC16.12■□□□□ 0.17
NPAS1Q99742 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.12■□□□□ 0.17
NPAS1Q99742 AC012615.1-201ENST00000565797 1299 ntBASIC16.12■□□□□ 0.17
NPAS1Q99742 CLEC4GP1-201ENST00000596555 870 ntBASIC16.12■□□□□ 0.17
NPAS1Q99742 Z69720.1-201ENST00000601483 472 ntBASIC16.12■□□□□ 0.17
NPAS1Q99742 AC099336.1-202ENST00000602961 463 ntBASIC16.12■□□□□ 0.17
NPAS1Q99742 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.12■□□□□ 0.17
NPAS1Q99742 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.12■□□□□ 0.17
NPAS1Q99742 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NPAS1Q99742 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
NPAS1Q99742 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
NPAS1Q99742 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 AC007967.3-201ENST00000434308 558 ntBASIC16.11■□□□□ 0.17
NPAS1Q99742 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 AC104819.1-201ENST00000504587 486 ntBASIC16.11■□□□□ 0.17
NPAS1Q99742 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.11■□□□□ 0.17
NPAS1Q99742 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.11■□□□□ 0.17
NPAS1Q99742 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.11■□□□□ 0.17
NPAS1Q99742 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.11■□□□□ 0.17
NPAS1Q99742 AC138894.3-201ENST00000603787 634 ntBASIC16.11■□□□□ 0.17
NPAS1Q99742 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms