Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 AL353692.3-201ENST00000407031 1396 ntBASIC18.17■□□□□ 0.5
SKA1Q96BD8 TNRC18P3-201ENST00000441896 2691 ntBASIC18.17■□□□□ 0.5
SKA1Q96BD8 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 AC112777.1-201ENST00000540175 1423 ntBASIC18.17■□□□□ 0.5
SKA1Q96BD8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 KRT16P4-201ENST00000453883 522 ntBASIC18.17■□□□□ 0.5
SKA1Q96BD8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 AL031008.1-201ENST00000619963 541 ntBASIC18.17■□□□□ 0.5
SKA1Q96BD8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SKA1Q96BD8 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
SKA1Q96BD8 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 AC141586.5-201ENST00000624546 2050 ntBASIC18.16■□□□□ 0.5
SKA1Q96BD8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 MINOS1P3-201ENST00000457048 203 ntBASIC18.16■□□□□ 0.5
SKA1Q96BD8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 AL353801.3-201ENST00000609898 542 ntBASIC18.16■□□□□ 0.5
SKA1Q96BD8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.16■□□□□ 0.5
SKA1Q96BD8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.16■□□□□ 0.5
SKA1Q96BD8 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SKA1Q96BD8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 AL357033.4-201ENST00000617703 1807 ntBASIC18.15■□□□□ 0.5
SKA1Q96BD8 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SKA1Q96BD8 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 KRT18P41-201ENST00000518924 1277 ntBASIC18.15■□□□□ 0.5
SKA1Q96BD8 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.15■□□□□ 0.5
SKA1Q96BD8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms