Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 AL049757.1-201ENST00000616842 1596 ntBASIC18.65■□□□□ 0.58
BDNFP23560 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.65■□□□□ 0.58
BDNFP23560 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.65■□□□□ 0.58
BDNFP23560 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.65■□□□□ 0.58
BDNFP23560 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 NKAPP1-205ENST00000585790 367 ntBASIC18.65■□□□□ 0.58
BDNFP23560 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 AL773604.1-201ENST00000617417 272 ntBASIC18.65■□□□□ 0.58
BDNFP23560 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
BDNFP23560 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.65■□□□□ 0.58
BDNFP23560 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.65■□□□□ 0.58
BDNFP23560 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
BDNFP23560 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BDNFP23560 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.58
BDNFP23560 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.64■□□□□ 0.57
BDNFP23560 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
BDNFP23560 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.64■□□□□ 0.57
BDNFP23560 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
BDNFP23560 AC073648.2-201ENST00000510116 352 ntBASIC18.64■□□□□ 0.57
BDNFP23560 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.64■□□□□ 0.57
BDNFP23560 AC021087.4-201ENST00000563761 564 ntBASIC18.64■□□□□ 0.57
BDNFP23560 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.64■□□□□ 0.57
BDNFP23560 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.64■□□□□ 0.57
BDNFP23560 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 AL390961.4-201ENST00000623958 2535 ntBASIC18.64■□□□□ 0.57
BDNFP23560 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.64■□□□□ 0.57
BDNFP23560 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.64■□□□□ 0.57
BDNFP23560 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
BDNFP23560 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
BDNFP23560 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 HTR7P1-202ENST00000624664 4411 ntBASIC18.63■□□□□ 0.57
BDNFP23560 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.63■□□□□ 0.57
BDNFP23560 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 AC018712.1-201ENST00000455767 687 ntBASIC18.63■□□□□ 0.57
BDNFP23560 RNA5SP419-201ENST00000515908 135 ntBASIC18.63■□□□□ 0.57
BDNFP23560 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.63■□□□□ 0.57
BDNFP23560 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 AC109462.3-201ENST00000573934 613 ntBASIC18.63■□□□□ 0.57
BDNFP23560 AC019129.2-201ENST00000609837 1235 ntBASIC18.63■□□□□ 0.57
BDNFP23560 AC073592.5-201ENST00000624854 528 ntBASIC18.63■□□□□ 0.57
BDNFP23560 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.63■□□□□ 0.57
BDNFP23560 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BDNFP23560 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.63■□□□□ 0.57
BDNFP23560 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.63■□□□□ 0.57
BDNFP23560 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.63■□□□□ 0.57
BDNFP23560 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
BDNFP23560 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms