Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPS15P9-201ENST00000494093 319 ntBASIC18.15■□□□□ 0.5
VCANP13611 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.15■□□□□ 0.5
VCANP13611 TMEM261P1-201ENST00000604899 340 ntBASIC18.15■□□□□ 0.5
VCANP13611 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.15■□□□□ 0.5
VCANP13611 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
VCANP13611 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VCANP13611 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
VCANP13611 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.14■□□□□ 0.5
VCANP13611 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
VCANP13611 DDX43P3-201ENST00000441064 443 ntBASIC18.14■□□□□ 0.5
VCANP13611 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.14■□□□□ 0.5
VCANP13611 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.14■□□□□ 0.5
VCANP13611 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.14■□□□□ 0.5
VCANP13611 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
VCANP13611 COX11-210ENST00000639671 696 ntBASIC18.14■□□□□ 0.5
VCANP13611 FEM1AP3-201ENST00000403722 1741 ntBASIC18.14■□□□□ 0.5
VCANP13611 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VCANP13611 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.14■□□□□ 0.49
VCANP13611 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.14■□□□□ 0.49
VCANP13611 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.14■□□□□ 0.49
VCANP13611 RAB43P1-201ENST00000561790 589 ntBASIC18.14■□□□□ 0.49
VCANP13611 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.14■□□□□ 0.49
VCANP13611 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.14■□□□□ 0.49
VCANP13611 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
VCANP13611 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.14■□□□□ 0.49
VCANP13611 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.14■□□□□ 0.49
VCANP13611 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.14■□□□□ 0.49
VCANP13611 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.14■□□□□ 0.49
VCANP13611 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCANP13611 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.14■□□□□ 0.49
VCANP13611 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VCANP13611 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 AC069120.2-201ENST00000524091 540 ntBASIC18.13■□□□□ 0.49
VCANP13611 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.13■□□□□ 0.49
VCANP13611 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 AC132938.6-201ENST00000623828 1655 ntBASIC18.13■□□□□ 0.49
VCANP13611 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 AC022210.1-201ENST00000449856 793 ntBASIC18.13■□□□□ 0.49
VCANP13611 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.13■□□□□ 0.49
VCANP13611 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 AC100757.3-201ENST00000622361 1406 ntBASIC18.13■□□□□ 0.49
VCANP13611 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.13■□□□□ 0.49
VCANP13611 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VCANP13611 TMEM14DP-201ENST00000422205 345 ntBASIC18.13■□□□□ 0.49
VCANP13611 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 AL109936.8-201ENST00000641772 604 ntBASIC18.13■□□□□ 0.49
VCANP13611 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.13■□□□□ 0.49
VCANP13611 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCANP13611 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.13■□□□□ 0.49
VCANP13611 AL049812.1-201ENST00000432563 2267 ntBASIC18.12■□□□□ 0.49
VCANP13611 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.12■□□□□ 0.49
VCANP13611 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.12■□□□□ 0.49
VCANP13611 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
VCANP13611 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.12■□□□□ 0.49
VCANP13611 TSSK5P-201ENST00000423978 907 ntBASIC18.12■□□□□ 0.49
VCANP13611 SPDYE11-202ENST00000450699 704 ntBASIC18.12■□□□□ 0.49
VCANP13611 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.12■□□□□ 0.49
VCANP13611 SPDYE9P-201ENST00000570642 692 ntBASIC18.12■□□□□ 0.49
VCANP13611 SPDYE10P-202ENST00000612005 668 ntBASIC18.12■□□□□ 0.49
VCANP13611 SPDYE8P-202ENST00000612377 668 ntBASIC18.12■□□□□ 0.49
VCANP13611 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.12■□□□□ 0.49
VCANP13611 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VCANP13611 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.12■□□□□ 0.49
VCANP13611 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VCANP13611 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.12■□□□□ 0.49
VCANP13611 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VCANP13611 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.12■□□□□ 0.49
VCANP13611 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.12■□□□□ 0.49
VCANP13611 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.11■□□□□ 0.49
VCANP13611 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms