Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
TPM1P09493 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 RPS2P55-201ENST00000397318 883 ntBASIC19.54■□□□□ 0.72
TPM1P09493 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 FAM201B-201ENST00000458407 597 ntBASIC19.54■□□□□ 0.72
TPM1P09493 AC107956.1-201ENST00000494359 873 ntBASIC19.54■□□□□ 0.72
TPM1P09493 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.54■□□□□ 0.72
TPM1P09493 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.54■□□□□ 0.72
TPM1P09493 MIR4651-201ENST00000582622 73 ntBASIC19.54■□□□□ 0.72
TPM1P09493 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.54■□□□□ 0.72
TPM1P09493 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.54■□□□□ 0.72
TPM1P09493 LINC00304-203ENST00000565008 1864 ntBASIC19.54■□□□□ 0.72
TPM1P09493 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TPM1P09493 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TPM1P09493 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.53■□□□□ 0.72
TPM1P09493 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC19.53■□□□□ 0.72
TPM1P09493 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.53■□□□□ 0.72
TPM1P09493 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
TPM1P09493 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.53■□□□□ 0.72
TPM1P09493 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.53■□□□□ 0.72
TPM1P09493 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.53■□□□□ 0.72
TPM1P09493 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.53■□□□□ 0.72
TPM1P09493 LINC01451-201ENST00000623792 534 ntBASIC19.53■□□□□ 0.72
TPM1P09493 F11R-206ENST00000621309 4770 ntTSL 5 BASIC19.53■□□□□ 0.72
TPM1P09493 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.53■□□□□ 0.72
TPM1P09493 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.53■□□□□ 0.72
TPM1P09493 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
TPM1P09493 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TPM1P09493 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
TPM1P09493 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.52■□□□□ 0.72
TPM1P09493 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
TPM1P09493 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.52■□□□□ 0.72
TPM1P09493 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.52■□□□□ 0.72
TPM1P09493 KRT18P29-201ENST00000397031 1267 ntBASIC19.52■□□□□ 0.72
TPM1P09493 AC012618.2-201ENST00000428058 849 ntBASIC19.52■□□□□ 0.72
TPM1P09493 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.52■□□□□ 0.72
TPM1P09493 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
TPM1P09493 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TPM1P09493 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.52■□□□□ 0.71
TPM1P09493 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
TPM1P09493 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
TPM1P09493 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TPM1P09493 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TPM1P09493 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC19.51■□□□□ 0.71
TPM1P09493 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TPM1P09493 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.51■□□□□ 0.71
TPM1P09493 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms