Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.47■□□□□ 0.23
CACNA1AO00555 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.47■□□□□ 0.23
CACNA1AO00555 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.47■□□□□ 0.23
CACNA1AO00555 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
CACNA1AO00555 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.47■□□□□ 0.23
CACNA1AO00555 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.47■□□□□ 0.23
CACNA1AO00555 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CACNA1AO00555 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CACNA1AO00555 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CACNA1AO00555 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
CACNA1AO00555 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.46■□□□□ 0.23
CACNA1AO00555 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.46■□□□□ 0.23
CACNA1AO00555 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.46■□□□□ 0.23
CACNA1AO00555 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 AC007389.4-201ENST00000454674 793 ntBASIC16.46■□□□□ 0.23
CACNA1AO00555 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.46■□□□□ 0.23
CACNA1AO00555 AC106872.11-201ENST00000605838 421 ntBASIC16.46■□□□□ 0.23
CACNA1AO00555 AC008494.3-201ENST00000606615 944 ntBASIC16.46■□□□□ 0.23
CACNA1AO00555 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.46■□□□□ 0.23
CACNA1AO00555 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC16.46■□□□□ 0.23
CACNA1AO00555 AC006538.1-201ENST00000567905 1585 ntBASIC16.46■□□□□ 0.23
CACNA1AO00555 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CACNA1AO00555 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CACNA1AO00555 HLA-V-204ENST00000476601 1289 ntBASIC16.46■□□□□ 0.22
CACNA1AO00555 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
CACNA1AO00555 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CACNA1AO00555 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.46■□□□□ 0.22
CACNA1AO00555 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CACNA1AO00555 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CACNA1AO00555 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.45■□□□□ 0.22
CACNA1AO00555 FP475955.4-201ENST00000623131 1990 ntBASIC16.45■□□□□ 0.22
CACNA1AO00555 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.45■□□□□ 0.22
CACNA1AO00555 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 ZNF767P-206ENST00000513792 565 ntBASIC16.45■□□□□ 0.22
CACNA1AO00555 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.45■□□□□ 0.22
CACNA1AO00555 SPDYE12P-201ENST00000618416 771 ntBASIC16.45■□□□□ 0.22
CACNA1AO00555 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 AC026310.3-201ENST00000625186 2373 ntBASIC16.45■□□□□ 0.22
CACNA1AO00555 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CACNA1AO00555 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CACNA1AO00555 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 AC011495.1-201ENST00000498085 584 ntBASIC16.45■□□□□ 0.22
CACNA1AO00555 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.45■□□□□ 0.22
CACNA1AO00555 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC16.45■□□□□ 0.22
CACNA1AO00555 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.45■□□□□ 0.22
CACNA1AO00555 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CACNA1AO00555 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CACNA1AO00555 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CACNA1AO00555 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.44■□□□□ 0.22
CACNA1AO00555 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.44■□□□□ 0.22
CACNA1AO00555 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.44■□□□□ 0.22
CACNA1AO00555 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.44■□□□□ 0.22
CACNA1AO00555 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 AC008738.7-201ENST00000609744 511 ntBASIC16.44■□□□□ 0.22
CACNA1AO00555 AC093677.2-201ENST00000600169 1863 ntBASIC16.44■□□□□ 0.22
CACNA1AO00555 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.44■□□□□ 0.22
CACNA1AO00555 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CACNA1AO00555 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CACNA1AO00555 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.44■□□□□ 0.22
CACNA1AO00555 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CACNA1AO00555 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms