Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.95■□□□□ 0.62
FOXN3O00409 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
FOXN3O00409 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXN3O00409 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
FOXN3O00409 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXN3O00409 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXN3O00409 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXN3O00409 AC016734.2-201ENST00000624325 1377 ntBASIC18.94■□□□□ 0.62
FOXN3O00409 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.94■□□□□ 0.62
FOXN3O00409 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
FOXN3O00409 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 AC005336.2-201ENST00000593183 939 ntBASIC18.94■□□□□ 0.62
FOXN3O00409 AC116407.4-201ENST00000623319 1061 ntBASIC18.94■□□□□ 0.62
FOXN3O00409 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
FOXN3O00409 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXN3O00409 LYSMD4-203ENST00000378904 2122 ntBASIC18.94■□□□□ 0.62
FOXN3O00409 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXN3O00409 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXN3O00409 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
FOXN3O00409 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.93■□□□□ 0.62
FOXN3O00409 AC125634.1-201ENST00000438758 1403 ntBASIC18.93■□□□□ 0.62
FOXN3O00409 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXN3O00409 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
FOXN3O00409 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.93■□□□□ 0.62
FOXN3O00409 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.93■□□□□ 0.62
FOXN3O00409 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
FOXN3O00409 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.93■□□□□ 0.62
FOXN3O00409 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.93■□□□□ 0.62
FOXN3O00409 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
FOXN3O00409 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.93■□□□□ 0.62
FOXN3O00409 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.93■□□□□ 0.62
FOXN3O00409 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXN3O00409 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
FOXN3O00409 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXN3O00409 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
FOXN3O00409 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
FOXN3O00409 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXN3O00409 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
FOXN3O00409 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
FOXN3O00409 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
FOXN3O00409 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
FOXN3O00409 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.92■□□□□ 0.62
FOXN3O00409 AC007967.3-201ENST00000434308 558 ntBASIC18.92■□□□□ 0.62
FOXN3O00409 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
FOXN3O00409 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.92■□□□□ 0.62
FOXN3O00409 AC091607.1-201ENST00000490318 1060 ntBASIC18.92■□□□□ 0.62
FOXN3O00409 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.92■□□□□ 0.62
FOXN3O00409 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 AC011840.4-201ENST00000578471 627 ntBASIC18.92■□□□□ 0.62
FOXN3O00409 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
FOXN3O00409 AL590326.2-201ENST00000625139 305 ntBASIC18.92■□□□□ 0.62
FOXN3O00409 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
FOXN3O00409 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
FOXN3O00409 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXN3O00409 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms