Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 BX664615.1-201ENST00000443558 458 ntBASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 AC068472.1-201ENST00000474589 881 ntBASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 YBX1P2-201ENST00000489612 999 ntBASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 AP003733.1-201ENST00000491725 852 ntBASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 AC139887.4-201ENST00000607877 719 ntBASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 AC012306.2-201ENST00000609350 630 ntBASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.51■□□□□ 0.55
PCDHA3Q9Y5H8 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 MTCL1P1-201ENST00000446207 792 ntBASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 AL353692.3-201ENST00000407031 1396 ntBASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHA3Q9Y5H8 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 AC113347.1-201ENST00000413321 391 ntBASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 AC066615.1-201ENST00000640911 628 ntBASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms