Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 AC087499.1-201ENST00000418141 1075 ntBASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 AC096633.1-201ENST00000422446 749 ntBASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 AC068472.1-201ENST00000474589 881 ntBASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 AL139327.4-201ENST00000612362 153 ntBASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMA1Q9UHB6 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 AC060834.1-201ENST00000443027 2032 ntBASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 MTCL1P1-201ENST00000446207 792 ntBASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 AC092597.1-201ENST00000487352 616 ntBASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 AC011558.1-201ENST00000623459 338 ntBASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMA1Q9UHB6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMA1Q9UHB6 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 MIR662-201ENST00000384847 95 ntBASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
LIMA1Q9UHB6 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 AC106886.4-201ENST00000623557 2502 ntBASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms