Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 PRORSD1P-202ENST00000563365 2154 ntBASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 AP000523.1-201ENST00000398242 1049 ntBASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 RASA4DP-201ENST00000460726 1199 ntBASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 AC009053.2-201ENST00000563701 2365 ntBASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM56Q9BRZ2 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 AC022211.2-201ENST00000585075 2527 ntBASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 SIRPAP1-201ENST00000448467 1770 ntBASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM56Q9BRZ2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms