Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 SLC25A1P2-201ENST00000430693 912 ntBASIC15.49■□□□□ 0.07
NKX3-1Q99801 TSPY17P-201ENST00000450329 467 ntBASIC15.49■□□□□ 0.07
NKX3-1Q99801 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NKX3-1Q99801 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.49■□□□□ 0.07
NKX3-1Q99801 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 KRT8P9-201ENST00000558927 1449 ntBASIC15.48■□□□□ 0.07
NKX3-1Q99801 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NKX3-1Q99801 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
NKX3-1Q99801 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms