Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.31■□□□□ 0.52
CDCA3Q99618 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CDCA3Q99618 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.31■□□□□ 0.52
CDCA3Q99618 RNA5SP421-201ENST00000516864 134 ntBASIC18.31■□□□□ 0.52
CDCA3Q99618 AC109322.1-201ENST00000524499 1264 ntBASIC18.31■□□□□ 0.52
CDCA3Q99618 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.31■□□□□ 0.52
CDCA3Q99618 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.31■□□□□ 0.52
CDCA3Q99618 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.31■□□□□ 0.52
CDCA3Q99618 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDCA3Q99618 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.3■□□□□ 0.52
CDCA3Q99618 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 AC002056.1-201ENST00000395613 760 ntBASIC18.3■□□□□ 0.52
CDCA3Q99618 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.3■□□□□ 0.52
CDCA3Q99618 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.3■□□□□ 0.52
CDCA3Q99618 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.3■□□□□ 0.52
CDCA3Q99618 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.3■□□□□ 0.52
CDCA3Q99618 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.3■□□□□ 0.52
CDCA3Q99618 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDCA3Q99618 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.3■□□□□ 0.52
CDCA3Q99618 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.3■□□□□ 0.52
CDCA3Q99618 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.29■□□□□ 0.52
CDCA3Q99618 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.29■□□□□ 0.52
CDCA3Q99618 AL590787.1-201ENST00000568856 1315 ntBASIC18.29■□□□□ 0.52
CDCA3Q99618 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
CDCA3Q99618 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 SLC25A24-204ENST00000569674 2357 ntBASIC18.29■□□□□ 0.52
CDCA3Q99618 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.29■□□□□ 0.52
CDCA3Q99618 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.29■□□□□ 0.52
CDCA3Q99618 FAM86C2P-203ENST00000528684 1004 ntBASIC18.29■□□□□ 0.52
CDCA3Q99618 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.29■□□□□ 0.52
CDCA3Q99618 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.29■□□□□ 0.52
CDCA3Q99618 MIR4745-201ENST00000577608 62 ntBASIC18.29■□□□□ 0.52
CDCA3Q99618 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.29■□□□□ 0.52
CDCA3Q99618 AC005498.2-205ENST00000593218 784 ntBASIC18.29■□□□□ 0.52
CDCA3Q99618 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.29■□□□□ 0.52
CDCA3Q99618 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.29■□□□□ 0.52
CDCA3Q99618 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.29■□□□□ 0.52
CDCA3Q99618 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.29■□□□□ 0.52
CDCA3Q99618 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDCA3Q99618 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDCA3Q99618 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.28■□□□□ 0.52
CDCA3Q99618 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.28■□□□□ 0.52
CDCA3Q99618 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CDCA3Q99618 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDCA3Q99618 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms