Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
USP28Q96RU2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.27■□□□□ 0.84
USP28Q96RU2 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
USP28Q96RU2 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
USP28Q96RU2 AC005104.2-201ENST00000427818 678 ntBASIC20.27■□□□□ 0.84
USP28Q96RU2 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.27■□□□□ 0.84
USP28Q96RU2 HOMER2P1-201ENST00000455653 964 ntBASIC20.27■□□□□ 0.84
USP28Q96RU2 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.27■□□□□ 0.84
USP28Q96RU2 AL390719.2-201ENST00000606993 987 ntBASIC20.27■□□□□ 0.84
USP28Q96RU2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USP28Q96RU2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.27■□□□□ 0.83
USP28Q96RU2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP28Q96RU2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USP28Q96RU2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.27■□□□□ 0.83
USP28Q96RU2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USP28Q96RU2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
USP28Q96RU2 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.26■□□□□ 0.83
USP28Q96RU2 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 AK4P3-201ENST00000418260 669 ntBASIC20.26■□□□□ 0.83
USP28Q96RU2 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.26■□□□□ 0.83
USP28Q96RU2 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.26■□□□□ 0.83
USP28Q96RU2 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.26■□□□□ 0.83
USP28Q96RU2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
USP28Q96RU2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP28Q96RU2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USP28Q96RU2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.26■□□□□ 0.83
USP28Q96RU2 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.25■□□□□ 0.83
USP28Q96RU2 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.25■□□□□ 0.83
USP28Q96RU2 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
USP28Q96RU2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
USP28Q96RU2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.25■□□□□ 0.83
USP28Q96RU2 AC104076.2-201ENST00000448912 469 ntBASIC20.25■□□□□ 0.83
USP28Q96RU2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.25■□□□□ 0.83
USP28Q96RU2 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
USP28Q96RU2 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.25■□□□□ 0.83
USP28Q96RU2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
USP28Q96RU2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.25■□□□□ 0.83
USP28Q96RU2 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.25■□□□□ 0.83
USP28Q96RU2 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP28Q96RU2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
USP28Q96RU2 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.24■□□□□ 0.83
USP28Q96RU2 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.24■□□□□ 0.83
USP28Q96RU2 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.24■□□□□ 0.83
USP28Q96RU2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP28Q96RU2 AC083849.1-201ENST00000615227 514 ntBASIC20.24■□□□□ 0.83
USP28Q96RU2 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms