Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NAPSB-206ENST00000562112 1266 ntBASIC19.15■□□□□ 0.66
CCDC42Q96M95 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.14■□□□□ 0.66
CCDC42Q96M95 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC42Q96M95 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 SNORA78-201ENST00000459373 127 ntBASIC19.14■□□□□ 0.65
CCDC42Q96M95 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCDC42Q96M95 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC42Q96M95 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 HMGA1P5-201ENST00000412453 271 ntBASIC19.13■□□□□ 0.65
CCDC42Q96M95 KRT18P65-201ENST00000439811 1286 ntBASIC19.13■□□□□ 0.65
CCDC42Q96M95 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 AC010947.1-201ENST00000623454 693 ntBASIC19.13■□□□□ 0.65
CCDC42Q96M95 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
CCDC42Q96M95 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC42Q96M95 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 KRT8P9-201ENST00000558927 1449 ntBASIC19.12■□□□□ 0.65
CCDC42Q96M95 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 AP000523.1-201ENST00000398242 1049 ntBASIC19.12■□□□□ 0.65
CCDC42Q96M95 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 ECEL1P2-202ENST00000465689 757 ntBASIC19.12■□□□□ 0.65
CCDC42Q96M95 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 FAM87A-204ENST00000613235 858 ntBASIC19.12■□□□□ 0.65
CCDC42Q96M95 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC42Q96M95 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms