Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
BRF1Q92994 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
BRF1Q92994 IER3-202ENST00000376377 1350 ntBASIC20.86■□□□□ 0.93
BRF1Q92994 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.86■□□□□ 0.93
BRF1Q92994 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.86■□□□□ 0.93
BRF1Q92994 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 AC005336.2-201ENST00000593183 939 ntBASIC20.86■□□□□ 0.93
BRF1Q92994 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 BX276092.7-203ENST00000637198 1536 ntBASIC20.86■□□□□ 0.93
BRF1Q92994 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
BRF1Q92994 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRF1Q92994 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.86■□□□□ 0.93
BRF1Q92994 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.85■□□□□ 0.93
BRF1Q92994 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.85■□□□□ 0.93
BRF1Q92994 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.85■□□□□ 0.93
BRF1Q92994 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.85■□□□□ 0.93
BRF1Q92994 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
BRF1Q92994 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
BRF1Q92994 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 CHCHD2P8-201ENST00000429873 447 ntBASIC20.85■□□□□ 0.93
BRF1Q92994 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.85■□□□□ 0.93
BRF1Q92994 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.85■□□□□ 0.93
BRF1Q92994 AC091607.1-201ENST00000490318 1060 ntBASIC20.85■□□□□ 0.93
BRF1Q92994 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.85■□□□□ 0.93
BRF1Q92994 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 LINC01451-201ENST00000623792 534 ntBASIC20.85■□□□□ 0.93
BRF1Q92994 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
BRF1Q92994 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.85■□□□□ 0.93
BRF1Q92994 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.85■□□□□ 0.93
BRF1Q92994 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
BRF1Q92994 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
BRF1Q92994 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRF1Q92994 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.84■□□□□ 0.93
BRF1Q92994 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.84■□□□□ 0.93
BRF1Q92994 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.84■□□□□ 0.93
BRF1Q92994 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.84■□□□□ 0.93
BRF1Q92994 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.84■□□□□ 0.93
BRF1Q92994 AC010331.1-201ENST00000611423 582 ntBASIC20.84■□□□□ 0.93
BRF1Q92994 AL358472.4-201ENST00000633140 710 ntBASIC20.84■□□□□ 0.93
BRF1Q92994 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRF1Q92994 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRF1Q92994 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRF1Q92994 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
BRF1Q92994 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.83■□□□□ 0.93
BRF1Q92994 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.83■□□□□ 0.93
BRF1Q92994 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRF1Q92994 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.83■□□□□ 0.93
BRF1Q92994 AC097374.2-201ENST00000618617 1306 ntBASIC20.83■□□□□ 0.93
BRF1Q92994 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.83■□□□□ 0.93
BRF1Q92994 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRF1Q92994 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
BRF1Q92994 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
BRF1Q92994 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms