Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC114341.1-201ENST00000618070 349 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC092183.1-201ENST00000469884 875 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC099336.1-202ENST00000602961 463 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AL022342.1-201ENST00000400363 863 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CSF3-203ENST00000394148 622 ntTSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 KRT18P3-201ENST00000451602 1288 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC018712.1-201ENST00000455767 687 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC090616.6-201ENST00000582640 721 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AP003733.1-201ENST00000491725 852 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AL355385.1-201ENST00000606123 409 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms