Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 AL096865.1-201ENST00000606796 927 ntBASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 GGTLC5P-201ENST00000617623 998 ntBASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC44A3Q8N4M1 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 PHGDH-209ENST00000641074 1780 ntBASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 BCRP1-201ENST00000444246 691 ntBASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 OR7E47P-204ENST00000575924 449 ntBASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC44A3Q8N4M1 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 AC004835.2-201ENST00000603762 682 ntBASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 AC007064.4-201ENST00000637740 555 ntBASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 BX323043.1-201ENST00000641006 1765 ntBASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SLC44A3Q8N4M1 AC116562.4-201ENST00000641316 2276 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AP002414.1-201ENST00000391405 1147 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC239800.4-201ENST00000603712 296 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC023141.13-201ENST00000604991 943 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC093512.1-201ENST00000617969 520 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC091812.2-201ENST00000619081 385 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms