Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.99■□□□□ 0.63
VCPP55072 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.98■□□□□ 0.63
VCPP55072 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 RPSAP43-201ENST00000402237 625 ntBASIC18.98■□□□□ 0.63
VCPP55072 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.98■□□□□ 0.63
VCPP55072 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 MIR3180-4-201ENST00000582223 153 ntBASIC18.98■□□□□ 0.63
VCPP55072 AC124864.1-201ENST00000623408 392 ntBASIC18.98■□□□□ 0.63
VCPP55072 AL096828.2-201ENST00000567259 1965 ntBASIC18.98■□□□□ 0.63
VCPP55072 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VCPP55072 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VCPP55072 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
VCPP55072 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.98■□□□□ 0.63
VCPP55072 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.98■□□□□ 0.63
VCPP55072 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCPP55072 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 PHGDH-209ENST00000641074 1780 ntBASIC18.97■□□□□ 0.63
VCPP55072 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.97■□□□□ 0.63
VCPP55072 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.97■□□□□ 0.63
VCPP55072 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.97■□□□□ 0.63
VCPP55072 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.97■□□□□ 0.63
VCPP55072 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.97■□□□□ 0.63
VCPP55072 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.97■□□□□ 0.63
VCPP55072 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
VCPP55072 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VCPP55072 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VCPP55072 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.96■□□□□ 0.63
VCPP55072 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.96■□□□□ 0.63
VCPP55072 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VCPP55072 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.96■□□□□ 0.63
VCPP55072 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.96■□□□□ 0.63
VCPP55072 GPX1P2-201ENST00000429271 606 ntBASIC18.96■□□□□ 0.63
VCPP55072 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VCPP55072 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.96■□□□□ 0.63
VCPP55072 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.96■□□□□ 0.63
VCPP55072 FAM215A-202ENST00000632077 792 ntBASIC18.96■□□□□ 0.63
VCPP55072 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.96■□□□□ 0.63
VCPP55072 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VCPP55072 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VCPP55072 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms