Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KRT8P32-201ENST00000512863 1461 ntBASIC14.52□□□□□ -0.08
CDX1P47902 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CDX1P47902 KRT8P7-201ENST00000533003 1432 ntBASIC14.52□□□□□ -0.08
CDX1P47902 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 STARP1-201ENST00000397973 869 ntBASIC14.52□□□□□ -0.09
CDX1P47902 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14.52□□□□□ -0.09
CDX1P47902 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.52□□□□□ -0.09
CDX1P47902 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.52□□□□□ -0.09
CDX1P47902 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC14.52□□□□□ -0.09
CDX1P47902 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 MYC-208ENST00000641036 567 ntBASIC14.52□□□□□ -0.09
CDX1P47902 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CDX1P47902 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.52□□□□□ -0.09
CDX1P47902 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 PCDHB19P-201ENST00000570871 2371 ntBASIC14.52□□□□□ -0.09
CDX1P47902 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CDX1P47902 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.52□□□□□ -0.09
CDX1P47902 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 AC036111.1-201ENST00000533973 1582 ntBASIC14.51□□□□□ -0.09
CDX1P47902 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CDX1P47902 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 RCC2P3-201ENST00000418112 1537 ntBASIC14.51□□□□□ -0.09
CDX1P47902 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.51□□□□□ -0.09
CDX1P47902 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
CDX1P47902 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 GCSHP2-201ENST00000560971 527 ntBASIC14.51□□□□□ -0.09
CDX1P47902 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.51□□□□□ -0.09
CDX1P47902 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
CDX1P47902 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
CDX1P47902 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.51□□□□□ -0.09
CDX1P47902 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.51□□□□□ -0.09
CDX1P47902 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CDX1P47902 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
CDX1P47902 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CDX1P47902 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.5□□□□□ -0.09
CDX1P47902 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CDX1P47902 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.5□□□□□ -0.09
CDX1P47902 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.5□□□□□ -0.09
CDX1P47902 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CDX1P47902 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.5□□□□□ -0.09
CDX1P47902 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
CDX1P47902 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.5□□□□□ -0.09
CDX1P47902 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CDX1P47902 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.5□□□□□ -0.09
CDX1P47902 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.5□□□□□ -0.09
CDX1P47902 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CDX1P47902 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms