Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
COL6A3P12111 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.29■□□□□ 0.52
COL6A3P12111 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.29■□□□□ 0.52
COL6A3P12111 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.29■□□□□ 0.52
COL6A3P12111 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A3P12111 AC100803.2-201ENST00000562459 1963 ntBASIC18.29■□□□□ 0.52
COL6A3P12111 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A3P12111 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.29■□□□□ 0.52
COL6A3P12111 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A3P12111 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.29■□□□□ 0.52
COL6A3P12111 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL6A3P12111 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 AC098614.1-201ENST00000368528 745 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A3P12111 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A3P12111 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.28■□□□□ 0.52
COL6A3P12111 MIR4453-201ENST00000584019 89 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A3P12111 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC18.28■□□□□ 0.52
COL6A3P12111 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A3P12111 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A3P12111 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.28■□□□□ 0.52
COL6A3P12111 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.28■□□□□ 0.52
COL6A3P12111 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 PTCHD3P3-201ENST00000403073 906 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 AP006294.1-201ENST00000415407 339 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL6A3P12111 AC027369.6-201ENST00000525520 931 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 AC008735.3-201ENST00000596646 500 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL6A3P12111 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
COL6A3P12111 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL6A3P12111 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
COL6A3P12111 AC099548.2-209ENST00000480264 625 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 AL590560.3-201ENST00000623350 461 ntBASIC18.28■□□□□ 0.52
COL6A3P12111 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.27■□□□□ 0.52
COL6A3P12111 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
COL6A3P12111 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.27■□□□□ 0.52
COL6A3P12111 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.27■□□□□ 0.52
COL6A3P12111 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.27■□□□□ 0.52
COL6A3P12111 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.27■□□□□ 0.52
COL6A3P12111 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.27■□□□□ 0.52
COL6A3P12111 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL6A3P12111 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
COL6A3P12111 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL6A3P12111 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A3P12111 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A3P12111 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL6A3P12111 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.27■□□□□ 0.51
COL6A3P12111 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.27■□□□□ 0.51
COL6A3P12111 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A3P12111 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A3P12111 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A3P12111 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A3P12111 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A3P12111 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A3P12111 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A3P12111 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A3P12111 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A3P12111 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A3P12111 FP475955.4-201ENST00000623131 1990 ntBASIC18.26■□□□□ 0.51
COL6A3P12111 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A3P12111 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.26■□□□□ 0.51
COL6A3P12111 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A3P12111 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC18.26■□□□□ 0.51
COL6A3P12111 AC008494.3-201ENST00000606615 944 ntBASIC18.26■□□□□ 0.51
COL6A3P12111 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A3P12111 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A3P12111 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL6A3P12111 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL6A3P12111 AC122714.2-201ENST00000502787 707 ntBASIC18.25■□□□□ 0.51
COL6A3P12111 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms