Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.98■□□□□ 0.31
CDX4O14627 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.98■□□□□ 0.31
CDX4O14627 AC138649.4-201ENST00000612222 287 ntBASIC16.98■□□□□ 0.31
CDX4O14627 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.98■□□□□ 0.31
CDX4O14627 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDX4O14627 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CDX4O14627 CLDN5-201ENST00000403084 2357 ntBASIC16.97■□□□□ 0.31
CDX4O14627 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX4O14627 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX4O14627 TIMM8BP1-201ENST00000452384 211 ntBASIC16.97■□□□□ 0.31
CDX4O14627 TERF1P3-201ENST00000505638 1227 ntBASIC16.97■□□□□ 0.31
CDX4O14627 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX4O14627 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX4O14627 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 RN7SL204P-201ENST00000582831 262 ntBASIC16.97■□□□□ 0.31
CDX4O14627 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.97■□□□□ 0.31
CDX4O14627 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CDX4O14627 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX4O14627 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX4O14627 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CDX4O14627 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
CDX4O14627 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.97■□□□□ 0.31
CDX4O14627 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.97■□□□□ 0.31
CDX4O14627 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CDX4O14627 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX4O14627 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
CDX4O14627 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX4O14627 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CDX4O14627 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.96■□□□□ 0.31
CDX4O14627 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX4O14627 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 MIR661-201ENST00000384842 89 ntBASIC16.96■□□□□ 0.31
CDX4O14627 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.96■□□□□ 0.31
CDX4O14627 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX4O14627 AC051619.7-201ENST00000568314 623 ntBASIC16.96■□□□□ 0.31
CDX4O14627 AC026120.1-201ENST00000611536 926 ntBASIC16.96■□□□□ 0.31
CDX4O14627 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 AC009336.1-201ENST00000608941 1553 ntBASIC16.96■□□□□ 0.31
CDX4O14627 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CDX4O14627 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.96■□□□□ 0.31
CDX4O14627 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX4O14627 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.3
CDX4O14627 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX4O14627 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX4O14627 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CDX4O14627 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CDX4O14627 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.96■□□□□ 0.3
CDX4O14627 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.96■□□□□ 0.3
CDX4O14627 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.96■□□□□ 0.3
CDX4O14627 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CDX4O14627 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.95■□□□□ 0.3
CDX4O14627 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.95■□□□□ 0.3
CDX4O14627 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 BASP1P1-201ENST00000430708 665 ntBASIC16.95■□□□□ 0.3
CDX4O14627 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CDX4O14627 TSPY16P-201ENST00000449843 468 ntBASIC16.95■□□□□ 0.3
CDX4O14627 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.95■□□□□ 0.3
CDX4O14627 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.95■□□□□ 0.3
CDX4O14627 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.95■□□□□ 0.3
CDX4O14627 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.95■□□□□ 0.3
CDX4O14627 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CDX4O14627 AC005332.7-201ENST00000614046 2005 ntBASIC16.95■□□□□ 0.3
CDX4O14627 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
CDX4O14627 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms