Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 AC128688.1-201ENST00000487626 519 ntBASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 OR6D1P-203ENST00000641209 4860 ntBASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 CYP2D8P-201ENST00000433633 1490 ntBASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 MIR718-201ENST00000390190 70 ntBASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AC113404.2-201ENST00000507884 177 ntBASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
TRIM49D1C9J1S8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 NEK4P2-201ENST00000580004 1012 ntBASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 KRT8P9-201ENST00000558927 1449 ntBASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM49D1C9J1S8 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM49D1C9J1S8 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms