Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.77■□□□□ 0.76
VTA1Q9NP79 AC009336.1-201ENST00000608941 1553 ntBASIC19.77■□□□□ 0.76
VTA1Q9NP79 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VTA1Q9NP79 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
VTA1Q9NP79 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VTA1Q9NP79 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
VTA1Q9NP79 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.77■□□□□ 0.75
VTA1Q9NP79 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.77■□□□□ 0.75
VTA1Q9NP79 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.77■□□□□ 0.75
VTA1Q9NP79 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
VTA1Q9NP79 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 BX323043.1-201ENST00000641006 1765 ntBASIC19.76■□□□□ 0.75
VTA1Q9NP79 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 GPR89P-201ENST00000407924 1495 ntBASIC19.76■□□□□ 0.75
VTA1Q9NP79 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 RPS8P6-201ENST00000426177 609 ntBASIC19.76■□□□□ 0.75
VTA1Q9NP79 HCG4B-203ENST00000450128 991 ntBASIC19.76■□□□□ 0.75
VTA1Q9NP79 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VTA1Q9NP79 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VTA1Q9NP79 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 MYCLP1-201ENST00000372451 1075 ntBASIC19.75■□□□□ 0.75
VTA1Q9NP79 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VTA1Q9NP79 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VTA1Q9NP79 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VTA1Q9NP79 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VTA1Q9NP79 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.74■□□□□ 0.75
VTA1Q9NP79 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VTA1Q9NP79 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VTA1Q9NP79 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms