Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
LINC00477Q96M19 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
LINC00477Q96M19 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
LINC00477Q96M19 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
LINC00477Q96M19 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RPS20-210ENST00000523936 899 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 LINC00304-203ENST00000565008 1864 ntBASIC13.33□□□□□ -0.28
LINC00477Q96M19 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00477Q96M19 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00477Q96M19 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 KRT8P9-201ENST00000558927 1449 ntBASIC13.32□□□□□ -0.28
LINC00477Q96M19 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 HES2-202ENST00000377836 507 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 AL031432.5-201ENST00000641059 760 ntBASIC13.32□□□□□ -0.28
LINC00477Q96M19 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 PP12613-201ENST00000424958 2230 ntBASIC13.32□□□□□ -0.28
LINC00477Q96M19 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 LINC01568-207ENST00000641790 1380 ntBASIC13.32□□□□□ -0.28
LINC00477Q96M19 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.32□□□□□ -0.28
LINC00477Q96M19 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LINC00477Q96M19 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms