Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 KRT8P32-201ENST00000512863 1461 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MYLKP1-201ENST00000509077 1580 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 CROCCP2-202ENST00000412962 2773 ntBASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RPUSD4Q96CM3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 NIFKP9-201ENST00000419265 221 ntBASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 POU5F1P3-201ENST00000428824 1078 ntBASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 RN7SL471P-201ENST00000580476 299 ntBASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 AC006058.3-201ENST00000606217 1069 ntBASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 AC105020.1-201ENST00000435356 2205 ntBASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RPUSD4Q96CM3 KRT8P11-201ENST00000409686 1436 ntBASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms