Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 SPDYE15P-201ENST00000424157 909 ntBASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AL441883.1-201ENST00000566170 1045 ntBASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AC116407.2-201ENST00000613639 860 ntBASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AC004263.2-201ENST00000617183 678 ntBASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AC011676.5-201ENST00000624864 2660 ntBASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATG4AQ8WYN0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 NKILA-202ENST00000614771 2598 ntBASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ATG4AQ8WYN0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATG4AQ8WYN0 KRT89P-201ENST00000620027 1478 ntBASIC18.39■□□□□ 0.54
ATG4AQ8WYN0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
ATG4AQ8WYN0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
ATG4AQ8WYN0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
ATG4AQ8WYN0 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 DDX43P3-201ENST00000441064 443 ntBASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 AC140113.3-201ENST00000605663 199 ntBASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 LINC01451-201ENST00000623792 534 ntBASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms