Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 IGHV3-65-201ENST00000523210 341 ntBASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC23.3■■□□□ 1.32
USHBP1Q8N6Y0 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 AC003669.1-201ENST00000334569 611 ntBASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 MIR4469-201ENST00000583919 79 ntBASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 AL078644.1-201ENST00000609881 752 ntBASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC23.29■■□□□ 1.32
USHBP1Q8N6Y0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 SIGLEC30P-201ENST00000455569 941 ntBASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 STK25P1-201ENST00000585406 838 ntBASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 AC008667.4-201ENST00000607370 168 ntBASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USHBP1Q8N6Y0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 AL020996.1-203ENST00000536896 2307 ntBASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 HNRNPA1P28-201ENST00000424481 961 ntBASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 AC079781.4-201ENST00000641908 219 ntBASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.27■■□□□ 1.32
USHBP1Q8N6Y0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.31
USHBP1Q8N6Y0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms