Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VRK3Q8IV63 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VRK3Q8IV63 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VRK3Q8IV63 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VRK3Q8IV63 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 MINOS1P3-201ENST00000457048 203 ntBASIC17.35■□□□□ 0.37
VRK3Q8IV63 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 AC104819.1-201ENST00000504587 486 ntBASIC17.35■□□□□ 0.37
VRK3Q8IV63 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 BX276092.7-203ENST00000637198 1536 ntBASIC17.35■□□□□ 0.37
VRK3Q8IV63 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VRK3Q8IV63 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VRK3Q8IV63 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VRK3Q8IV63 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 COX5BP2-201ENST00000392354 334 ntBASIC17.34■□□□□ 0.37
VRK3Q8IV63 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 AC026471.1-201ENST00000564629 3026 ntBASIC17.34■□□□□ 0.37
VRK3Q8IV63 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 AC099336.1-202ENST00000602961 463 ntBASIC17.34■□□□□ 0.37
VRK3Q8IV63 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 TP73-AS1-210ENST00000637775 1455 ntBASIC17.34■□□□□ 0.37
VRK3Q8IV63 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VRK3Q8IV63 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.34■□□□□ 0.37
VRK3Q8IV63 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.37
VRK3Q8IV63 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
VRK3Q8IV63 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
VRK3Q8IV63 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.33■□□□□ 0.37
VRK3Q8IV63 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VRK3Q8IV63 SIRPAP1-201ENST00000448467 1770 ntBASIC17.33■□□□□ 0.37
VRK3Q8IV63 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VRK3Q8IV63 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VRK3Q8IV63 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VRK3Q8IV63 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 AC096582.2-201ENST00000510860 516 ntBASIC17.33■□□□□ 0.36
VRK3Q8IV63 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.33■□□□□ 0.36
VRK3Q8IV63 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VRK3Q8IV63 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VRK3Q8IV63 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms