Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 FAM185BP-201ENST00000443595 716 ntBASIC23.91■■□□□ 1.42
NPHP3Q7Z494 INGX-202ENST00000489074 768 ntBASIC23.91■■□□□ 1.42
NPHP3Q7Z494 CCDC74BP1-201ENST00000508880 1123 ntBASIC23.91■■□□□ 1.42
NPHP3Q7Z494 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP3Q7Z494 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 CNN2P2-201ENST00000443536 909 ntBASIC23.9■■□□□ 1.42
NPHP3Q7Z494 CNN2P3-201ENST00000450201 906 ntBASIC23.9■■□□□ 1.42
NPHP3Q7Z494 TIMM8BP1-201ENST00000452384 211 ntBASIC23.9■■□□□ 1.42
NPHP3Q7Z494 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 POLD4-211ENST00000539074 714 ntTSL 3 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 AC005225.4-201ENST00000557330 545 ntBASIC23.9■■□□□ 1.42
NPHP3Q7Z494 AL136317.3-201ENST00000618497 906 ntBASIC23.9■■□□□ 1.42
NPHP3Q7Z494 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP3Q7Z494 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 TERF1P3-201ENST00000505638 1227 ntBASIC23.89■■□□□ 1.42
NPHP3Q7Z494 VPS29-207ENST00000549970 818 ntTSL 3 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC23.89■■□□□ 1.42
NPHP3Q7Z494 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP3Q7Z494 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP3Q7Z494 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 AC051619.7-201ENST00000568314 623 ntBASIC23.88■■□□□ 1.41
NPHP3Q7Z494 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 YTHDF3-AS1-201ENST00000603538 718 ntBASIC23.88■■□□□ 1.41
NPHP3Q7Z494 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP3Q7Z494 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 AC236430.1-201ENST00000402231 743 ntBASIC23.87■■□□□ 1.41
NPHP3Q7Z494 AL355306.1-201ENST00000415580 579 ntBASIC23.87■■□□□ 1.41
NPHP3Q7Z494 BASP1P1-201ENST00000430708 665 ntBASIC23.87■■□□□ 1.41
NPHP3Q7Z494 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 NAA60-208ENST00000570819 833 ntTSL 2 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 AC026120.1-201ENST00000611536 926 ntBASIC23.87■■□□□ 1.41
NPHP3Q7Z494 ACTL9-202ENST00000612068 1252 ntBASIC23.87■■□□□ 1.41
NPHP3Q7Z494 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
NPHP3Q7Z494 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms