Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.6□□□□□ -0.39
COL7A1Q02388 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 GNAS-203ENST00000306120 1878 ntBASIC12.59□□□□□ -0.39
COL7A1Q02388 AC008677.1-201ENST00000519230 1561 ntBASIC12.59□□□□□ -0.39
COL7A1Q02388 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
COL7A1Q02388 AC245100.3-201ENST00000441281 285 ntBASIC12.59□□□□□ -0.39
COL7A1Q02388 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 AL353593.2-201ENST00000602529 1483 ntBASIC12.59□□□□□ -0.39
COL7A1Q02388 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC12.59□□□□□ -0.39
COL7A1Q02388 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC12.59□□□□□ -0.39
COL7A1Q02388 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.59□□□□□ -0.39
COL7A1Q02388 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
COL7A1Q02388 AC010336.2-201ENST00000564226 506 ntBASIC12.59□□□□□ -0.39
COL7A1Q02388 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC12.59□□□□□ -0.39
COL7A1Q02388 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC12.59□□□□□ -0.39
COL7A1Q02388 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 AC006116.8-202ENST00000587620 1550 ntBASIC12.59□□□□□ -0.39
COL7A1Q02388 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
COL7A1Q02388 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
COL7A1Q02388 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC12.59□□□□□ -0.39
COL7A1Q02388 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
COL7A1Q02388 FAM185BP-201ENST00000443595 716 ntBASIC12.58□□□□□ -0.39
COL7A1Q02388 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.58□□□□□ -0.39
COL7A1Q02388 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.58□□□□□ -0.39
COL7A1Q02388 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.39
COL7A1Q02388 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
COL7A1Q02388 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
COL7A1Q02388 AC027307.3-201ENST00000594262 1100 ntBASIC12.58□□□□□ -0.39
COL7A1Q02388 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
COL7A1Q02388 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.39
COL7A1Q02388 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC12.58□□□□□ -0.4
COL7A1Q02388 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC12.58□□□□□ -0.4
COL7A1Q02388 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
COL7A1Q02388 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.58□□□□□ -0.4
COL7A1Q02388 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 AC112191.1-201ENST00000523689 701 ntBASIC12.58□□□□□ -0.4
COL7A1Q02388 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
COL7A1Q02388 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
COL7A1Q02388 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.58□□□□□ -0.4
COL7A1Q02388 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.58□□□□□ -0.4
COL7A1Q02388 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC12.58□□□□□ -0.4
COL7A1Q02388 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.58□□□□□ -0.4
COL7A1Q02388 AL135744.1-201ENST00000565098 629 ntBASIC12.58□□□□□ -0.4
COL7A1Q02388 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC12.58□□□□□ -0.4
COL7A1Q02388 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL7A1Q02388 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL7A1Q02388 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.57□□□□□ -0.4
COL7A1Q02388 AC140658.5-201ENST00000438532 169 ntBASIC12.57□□□□□ -0.4
COL7A1Q02388 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.57□□□□□ -0.4
COL7A1Q02388 AC140878.1-201ENST00000565277 250 ntBASIC12.57□□□□□ -0.4
COL7A1Q02388 AL390754.1-201ENST00000619088 582 ntBASIC12.57□□□□□ -0.4
COL7A1Q02388 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC12.57□□□□□ -0.4
COL7A1Q02388 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms