Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.24■□□□□ 0.03
ABCA4P78363 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ABCA4P78363 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
ABCA4P78363 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.24■□□□□ 0.03
ABCA4P78363 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.24■□□□□ 0.03
ABCA4P78363 AC006504.4-201ENST00000592118 1568 ntBASIC15.24■□□□□ 0.03
ABCA4P78363 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.24■□□□□ 0.03
ABCA4P78363 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.24■□□□□ 0.03
ABCA4P78363 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.24■□□□□ 0.03
ABCA4P78363 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 AC092865.6-201ENST00000642101 219 ntBASIC15.24■□□□□ 0.03
ABCA4P78363 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
ABCA4P78363 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 PHGDH-209ENST00000641074 1780 ntBASIC15.24■□□□□ 0.03
ABCA4P78363 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
ABCA4P78363 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.23■□□□□ 0.03
ABCA4P78363 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 SIRPAP1-201ENST00000448467 1770 ntBASIC15.23■□□□□ 0.03
ABCA4P78363 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ABCA4P78363 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.23■□□□□ 0.03
ABCA4P78363 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 BX005266.1-201ENST00000473402 457 ntBASIC15.23■□□□□ 0.03
ABCA4P78363 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.23■□□□□ 0.03
ABCA4P78363 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC15.23■□□□□ 0.03
ABCA4P78363 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 AC087289.5-201ENST00000586076 3175 ntBASIC15.23■□□□□ 0.03
ABCA4P78363 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 AC148477.5-201ENST00000625164 1645 ntBASIC15.23■□□□□ 0.03
ABCA4P78363 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.23■□□□□ 0.03
ABCA4P78363 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 AC073621.1-201ENST00000392730 636 ntBASIC15.23■□□□□ 0.03
ABCA4P78363 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.23■□□□□ 0.03
ABCA4P78363 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA4P78363 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA4P78363 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 AC093010.1-201ENST00000473625 1624 ntBASIC15.22■□□□□ 0.03
ABCA4P78363 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.22■□□□□ 0.03
ABCA4P78363 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
ABCA4P78363 AC108073.2-201ENST00000464002 357 ntBASIC15.22■□□□□ 0.03
ABCA4P78363 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.22■□□□□ 0.03
ABCA4P78363 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.22■□□□□ 0.03
ABCA4P78363 AP000867.4-201ENST00000641616 219 ntBASIC15.22■□□□□ 0.03
ABCA4P78363 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
ABCA4P78363 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.22■□□□□ 0.03
ABCA4P78363 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms