Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.2■□□□□ 0.34
FOXA1P55317 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.2■□□□□ 0.34
FOXA1P55317 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
FOXA1P55317 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXA1P55317 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.19■□□□□ 0.34
FOXA1P55317 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXA1P55317 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.19■□□□□ 0.34
FOXA1P55317 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 KRT18P48-201ENST00000434763 852 ntBASIC17.19■□□□□ 0.34
FOXA1P55317 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 AC112698.1-201ENST00000510299 916 ntBASIC17.19■□□□□ 0.34
FOXA1P55317 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
FOXA1P55317 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXA1P55317 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXA1P55317 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.19■□□□□ 0.34
FOXA1P55317 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
FOXA1P55317 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.19■□□□□ 0.34
FOXA1P55317 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
FOXA1P55317 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA1P55317 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
FOXA1P55317 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
FOXA1P55317 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 LIN28AP1-201ENST00000429574 405 ntBASIC17.18■□□□□ 0.34
FOXA1P55317 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.18■□□□□ 0.34
FOXA1P55317 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
FOXA1P55317 AC139887.4-201ENST00000607877 719 ntBASIC17.18■□□□□ 0.34
FOXA1P55317 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
FOXA1P55317 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.18■□□□□ 0.34
FOXA1P55317 AC009154.2-201ENST00000621177 724 ntBASIC17.18■□□□□ 0.34
FOXA1P55317 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
FOXA1P55317 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.18■□□□□ 0.34
FOXA1P55317 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
FOXA1P55317 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA1P55317 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 STARP1-201ENST00000397973 869 ntBASIC17.17■□□□□ 0.34
FOXA1P55317 TSPY12P-201ENST00000421279 868 ntBASIC17.17■□□□□ 0.34
FOXA1P55317 ATP5G1P1-201ENST00000448724 379 ntBASIC17.17■□□□□ 0.34
FOXA1P55317 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.17■□□□□ 0.34
FOXA1P55317 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.17■□□□□ 0.34
FOXA1P55317 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.17■□□□□ 0.34
FOXA1P55317 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms