Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VCPP55072 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VCPP55072 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
VCPP55072 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.02■□□□□ 0.63
VCPP55072 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VCPP55072 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.02■□□□□ 0.63
VCPP55072 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VCPP55072 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VCPP55072 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VCPP55072 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.02■□□□□ 0.63
VCPP55072 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.02■□□□□ 0.63
VCPP55072 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.01■□□□□ 0.63
VCPP55072 SLC25A6P5-201ENST00000435663 894 ntBASIC19.01■□□□□ 0.63
VCPP55072 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 AL592071.1-201ENST00000611956 408 ntBASIC19.01■□□□□ 0.63
VCPP55072 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.01■□□□□ 0.63
VCPP55072 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 GMCL1P1-201ENST00000463439 1581 ntBASIC19.01■□□□□ 0.63
VCPP55072 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.01■□□□□ 0.63
VCPP55072 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
VCPP55072 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCPP55072 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19■□□□□ 0.63
VCPP55072 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VCPP55072 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VCPP55072 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VCPP55072 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 HES2-202ENST00000377836 507 ntTSL 2 BASIC19■□□□□ 0.63
VCPP55072 AC091607.1-201ENST00000490318 1060 ntBASIC19■□□□□ 0.63
VCPP55072 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19■□□□□ 0.63
VCPP55072 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19■□□□□ 0.63
VCPP55072 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19■□□□□ 0.63
VCPP55072 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19■□□□□ 0.63
VCPP55072 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
VCPP55072 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19■□□□□ 0.63
VCPP55072 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VCPP55072 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCPP55072 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
VCPP55072 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.99■□□□□ 0.63
VCPP55072 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
VCPP55072 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VCPP55072 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.99■□□□□ 0.63
VCPP55072 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.99■□□□□ 0.63
VCPP55072 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.99■□□□□ 0.63
VCPP55072 AC018712.1-201ENST00000455767 687 ntBASIC18.99■□□□□ 0.63
VCPP55072 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCPP55072 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.99■□□□□ 0.63
VCPP55072 FLJ13224-201ENST00000313737 1514 ntBASIC18.99■□□□□ 0.63
VCPP55072 AL163051.1-201ENST00000569214 1512 ntBASIC18.99■□□□□ 0.63
VCPP55072 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VCPP55072 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms