Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.47■□□□□ 0.87
CTCFP49711 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.47■□□□□ 0.87
CTCFP49711 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.47■□□□□ 0.87
CTCFP49711 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.47■□□□□ 0.87
CTCFP49711 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.47■□□□□ 0.87
CTCFP49711 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CTCFP49711 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CTCFP49711 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.47■□□□□ 0.87
CTCFP49711 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.47■□□□□ 0.87
CTCFP49711 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTCFP49711 FO538757.1-201ENST00000623083 1397 ntBASIC20.46■□□□□ 0.87
CTCFP49711 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 AC026471.1-201ENST00000564629 3026 ntBASIC20.46■□□□□ 0.87
CTCFP49711 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 CU639417.3-201ENST00000624240 1404 ntBASIC20.46■□□□□ 0.87
CTCFP49711 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CTCFP49711 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 AC005237.2-201ENST00000434368 219 ntBASIC20.46■□□□□ 0.87
CTCFP49711 RPS2P32-201ENST00000439199 892 ntBASIC20.46■□□□□ 0.87
CTCFP49711 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 TIMM8BP1-201ENST00000452384 211 ntBASIC20.46■□□□□ 0.87
CTCFP49711 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.46■□□□□ 0.87
CTCFP49711 IGHV3-42-201ENST00000520410 361 ntBASIC20.46■□□□□ 0.87
CTCFP49711 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.46■□□□□ 0.87
CTCFP49711 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.46■□□□□ 0.87
CTCFP49711 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC20.46■□□□□ 0.87
CTCFP49711 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.46■□□□□ 0.87
CTCFP49711 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CTCFP49711 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CTCFP49711 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.46■□□□□ 0.87
CTCFP49711 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CTCFP49711 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CTCFP49711 LINC01126-201ENST00000623515 1646 ntBASIC20.45■□□□□ 0.87
CTCFP49711 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 AC125807.1-201ENST00000483097 614 ntBASIC20.45■□□□□ 0.86
CTCFP49711 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 AC069335.1-201ENST00000489972 472 ntBASIC20.45■□□□□ 0.86
CTCFP49711 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.45■□□□□ 0.86
CTCFP49711 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.45■□□□□ 0.86
CTCFP49711 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CTCFP49711 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CTCFP49711 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.45■□□□□ 0.86
CTCFP49711 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTCFP49711 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms