Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 AC004890.2-204ENST00000481968 304 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.41■■□□□ 1.02
BRCA1P38398 SLC25A6P2-201ENST00000497974 877 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.41■■□□□ 1.02
BRCA1P38398 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.41■■□□□ 1.02
BRCA1P38398 RARRES2P8-201ENST00000566335 367 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 AL008721.1-201ENST00000609964 604 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
BRCA1P38398 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 AKAP8P1-201ENST00000434743 1349 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 AC002056.1-201ENST00000395613 760 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
BRCA1P38398 AC022494.1-201ENST00000466044 728 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 AC107918.2-201ENST00000530817 355 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
BRCA1P38398 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.41■■□□□ 1.02
BRCA1P38398 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BRCA1P38398 BX276092.7-203ENST00000637198 1536 ntBASIC21.41■■□□□ 1.02
BRCA1P38398 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BRCA1P38398 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BRCA1P38398 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
BRCA1P38398 AC008677.1-201ENST00000519230 1561 ntBASIC21.4■■□□□ 1.02
BRCA1P38398 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.4■■□□□ 1.02
BRCA1P38398 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
BRCA1P38398 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BRCA1P38398 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.4■■□□□ 1.02
BRCA1P38398 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.4■■□□□ 1.02
BRCA1P38398 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.4■■□□□ 1.02
BRCA1P38398 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.4■■□□□ 1.02
BRCA1P38398 PHGDH-209ENST00000641074 1780 ntBASIC21.4■■□□□ 1.02
BRCA1P38398 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
BRCA1P38398 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.4■■□□□ 1.02
BRCA1P38398 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.4■■□□□ 1.02
BRCA1P38398 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
BRCA1P38398 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
BRCA1P38398 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
BRCA1P38398 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.39■■□□□ 1.02
BRCA1P38398 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.39■■□□□ 1.02
BRCA1P38398 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
BRCA1P38398 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.39■■□□□ 1.02
BRCA1P38398 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
BRCA1P38398 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
BRCA1P38398 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC21.39■■□□□ 1.02
BRCA1P38398 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC21.39■■□□□ 1.02
BRCA1P38398 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.39■■□□□ 1.02
BRCA1P38398 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.39■■□□□ 1.01
BRCA1P38398 AC007952.6-201ENST00000573168 2673 ntBASIC21.39■■□□□ 1.01
BRCA1P38398 AC003957.1-201ENST00000625108 2673 ntBASIC21.39■■□□□ 1.01
BRCA1P38398 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
BRCA1P38398 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
BRCA1P38398 CALY-202ENST00000368555 783 ntTSL 2 BASIC21.39■■□□□ 1.01
BRCA1P38398 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
BRCA1P38398 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.39■■□□□ 1.01
BRCA1P38398 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.39■■□□□ 1.01
BRCA1P38398 SERBP1P5-201ENST00000510079 1181 ntBASIC21.39■■□□□ 1.01
BRCA1P38398 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.38■■□□□ 1.01
BRCA1P38398 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.38■■□□□ 1.01
BRCA1P38398 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.38■■□□□ 1.01
BRCA1P38398 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.38■■□□□ 1.01
BRCA1P38398 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
BRCA1P38398 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
BRCA1P38398 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.38■■□□□ 1.01
BRCA1P38398 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.38■■□□□ 1.01
BRCA1P38398 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRCA1P38398 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.38■■□□□ 1.01
BRCA1P38398 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.37■■□□□ 1.01
BRCA1P38398 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
BRCA1P38398 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.37■■□□□ 1.01
BRCA1P38398 FAM86C2P-203ENST00000528684 1004 ntBASIC21.37■■□□□ 1.01
BRCA1P38398 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.37■■□□□ 1.01
BRCA1P38398 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms