Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 IGLL3P-201ENST00000412472 434 ntBASIC15.47■□□□□ 0.07
COL8A1P27658 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.47■□□□□ 0.07
COL8A1P27658 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.47■□□□□ 0.07
COL8A1P27658 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.47■□□□□ 0.07
COL8A1P27658 PMPCAP1-201ENST00000508114 1576 ntBASIC15.47■□□□□ 0.07
COL8A1P27658 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.47■□□□□ 0.07
COL8A1P27658 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL8A1P27658 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.47■□□□□ 0.07
COL8A1P27658 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.47■□□□□ 0.07
COL8A1P27658 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.47■□□□□ 0.07
COL8A1P27658 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.47■□□□□ 0.07
COL8A1P27658 AL024508.2-201ENST00000607749 1894 ntBASIC15.47■□□□□ 0.07
COL8A1P27658 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL8A1P27658 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.47■□□□□ 0.07
COL8A1P27658 LINC00628-201ENST00000628516 1289 ntBASIC15.47■□□□□ 0.07
COL8A1P27658 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL8A1P27658 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
COL8A1P27658 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL8A1P27658 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL8A1P27658 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
COL8A1P27658 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.47■□□□□ 0.07
COL8A1P27658 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL8A1P27658 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
COL8A1P27658 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.46■□□□□ 0.07
COL8A1P27658 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.46■□□□□ 0.07
COL8A1P27658 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL8A1P27658 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
COL8A1P27658 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
COL8A1P27658 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 MEIS3P1-201ENST00000495167 958 ntBASIC15.46■□□□□ 0.07
COL8A1P27658 RNA5SP421-201ENST00000516864 134 ntBASIC15.46■□□□□ 0.07
COL8A1P27658 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.46■□□□□ 0.07
COL8A1P27658 AL513210.1-201ENST00000629608 234 ntBASIC15.46■□□□□ 0.07
COL8A1P27658 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL8A1P27658 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.46■□□□□ 0.07
COL8A1P27658 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL8A1P27658 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
COL8A1P27658 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL8A1P27658 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
COL8A1P27658 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL8A1P27658 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.06
COL8A1P27658 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.46■□□□□ 0.06
COL8A1P27658 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.06
COL8A1P27658 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.45■□□□□ 0.06
COL8A1P27658 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.45■□□□□ 0.06
COL8A1P27658 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.45■□□□□ 0.06
COL8A1P27658 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.45■□□□□ 0.06
COL8A1P27658 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.45■□□□□ 0.06
COL8A1P27658 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.45■□□□□ 0.06
COL8A1P27658 AC007967.3-201ENST00000434308 558 ntBASIC15.45■□□□□ 0.06
COL8A1P27658 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.45■□□□□ 0.06
COL8A1P27658 AC112698.1-201ENST00000510299 916 ntBASIC15.45■□□□□ 0.06
COL8A1P27658 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.45■□□□□ 0.06
COL8A1P27658 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.45■□□□□ 0.06
COL8A1P27658 KRT19P2-202ENST00000557173 1012 ntBASIC15.45■□□□□ 0.06
COL8A1P27658 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 AC091812.2-201ENST00000619081 385 ntBASIC15.45■□□□□ 0.06
COL8A1P27658 AC004706.3-202ENST00000621574 984 ntBASIC15.45■□□□□ 0.06
COL8A1P27658 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.45■□□□□ 0.06
COL8A1P27658 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.45■□□□□ 0.06
COL8A1P27658 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.45■□□□□ 0.06
COL8A1P27658 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.45■□□□□ 0.06
COL8A1P27658 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL8A1P27658 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms