Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.91■□□□□ 0.3
COL5A1P20908 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 AC096734.2-201ENST00000562054 433 ntBASIC16.91■□□□□ 0.3
COL5A1P20908 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.91■□□□□ 0.3
COL5A1P20908 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.91■□□□□ 0.3
COL5A1P20908 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 AC091812.2-201ENST00000619081 385 ntBASIC16.91■□□□□ 0.3
COL5A1P20908 AC007064.4-201ENST00000637740 555 ntBASIC16.91■□□□□ 0.3
COL5A1P20908 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.9■□□□□ 0.3
COL5A1P20908 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.9■□□□□ 0.3
COL5A1P20908 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COL5A1P20908 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 FAM58CP-201ENST00000435741 640 ntBASIC16.9■□□□□ 0.3
COL5A1P20908 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.9■□□□□ 0.3
COL5A1P20908 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.9■□□□□ 0.3
COL5A1P20908 STK25P1-201ENST00000585406 838 ntBASIC16.9■□□□□ 0.3
COL5A1P20908 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.9■□□□□ 0.3
COL5A1P20908 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.9■□□□□ 0.3
COL5A1P20908 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL5A1P20908 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL5A1P20908 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.89■□□□□ 0.3
COL5A1P20908 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL5A1P20908 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.89■□□□□ 0.29
COL5A1P20908 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.89■□□□□ 0.29
COL5A1P20908 OR7E47P-204ENST00000575924 449 ntBASIC16.89■□□□□ 0.29
COL5A1P20908 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.89■□□□□ 0.29
COL5A1P20908 AL096865.1-201ENST00000606796 927 ntBASIC16.89■□□□□ 0.29
COL5A1P20908 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL5A1P20908 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.89■□□□□ 0.29
COL5A1P20908 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.89■□□□□ 0.29
COL5A1P20908 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.89■□□□□ 0.29
COL5A1P20908 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.89■□□□□ 0.29
COL5A1P20908 AL353135.1-201ENST00000606729 504 ntBASIC16.89■□□□□ 0.29
COL5A1P20908 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL5A1P20908 AC093028.1-201ENST00000622998 982 ntBASIC16.89■□□□□ 0.29
COL5A1P20908 AC092902.6-201ENST00000641783 218 ntBASIC16.89■□□□□ 0.29
COL5A1P20908 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 AC093677.2-201ENST00000600169 1863 ntBASIC16.88■□□□□ 0.29
COL5A1P20908 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
COL5A1P20908 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.88■□□□□ 0.29
COL5A1P20908 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.88■□□□□ 0.29
COL5A1P20908 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 AL139400.1-201ENST00000366220 510 ntBASIC16.88■□□□□ 0.29
COL5A1P20908 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.88■□□□□ 0.29
COL5A1P20908 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.88■□□□□ 0.29
COL5A1P20908 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.88■□□□□ 0.29
COL5A1P20908 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL5A1P20908 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL5A1P20908 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.87■□□□□ 0.29
COL5A1P20908 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms