Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LDLRP01130 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
LDLRP01130 AC112907.2-201ENST00000448639 330 ntBASIC17.2■□□□□ 0.34
LDLRP01130 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.2■□□□□ 0.34
LDLRP01130 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.2■□□□□ 0.34
LDLRP01130 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.2■□□□□ 0.34
LDLRP01130 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.2■□□□□ 0.34
LDLRP01130 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
LDLRP01130 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.2■□□□□ 0.34
LDLRP01130 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
LDLRP01130 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.2■□□□□ 0.34
LDLRP01130 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
LDLRP01130 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.2■□□□□ 0.34
LDLRP01130 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.2■□□□□ 0.34
LDLRP01130 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.2■□□□□ 0.34
LDLRP01130 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.2■□□□□ 0.34
LDLRP01130 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LDLRP01130 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LDLRP01130 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.19■□□□□ 0.34
LDLRP01130 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LDLRP01130 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.19■□□□□ 0.34
LDLRP01130 AP000347.1-202ENST00000435868 847 ntBASIC17.19■□□□□ 0.34
LDLRP01130 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.19■□□□□ 0.34
LDLRP01130 CA15P1-201ENST00000481698 905 ntBASIC17.19■□□□□ 0.34
LDLRP01130 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.19■□□□□ 0.34
LDLRP01130 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.19■□□□□ 0.34
LDLRP01130 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 GPALPP1-207ENST00000611650 899 ntBASIC17.19■□□□□ 0.34
LDLRP01130 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.19■□□□□ 0.34
LDLRP01130 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.19■□□□□ 0.34
LDLRP01130 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LDLRP01130 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
LDLRP01130 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.19■□□□□ 0.34
LDLRP01130 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LDLRP01130 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.19■□□□□ 0.34
LDLRP01130 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.18■□□□□ 0.34
LDLRP01130 AL023806.1-201ENST00000603994 1649 ntBASIC17.18■□□□□ 0.34
LDLRP01130 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.18■□□□□ 0.34
LDLRP01130 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LDLRP01130 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.18■□□□□ 0.34
LDLRP01130 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.18■□□□□ 0.34
LDLRP01130 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.18■□□□□ 0.34
LDLRP01130 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.18■□□□□ 0.34
LDLRP01130 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.18■□□□□ 0.34
LDLRP01130 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 GMCL1P1-201ENST00000463439 1581 ntBASIC17.18■□□□□ 0.34
LDLRP01130 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
LDLRP01130 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LDLRP01130 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
LDLRP01130 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms