Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.73■□□□□ 0.27
LDB3O75112 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LDB3O75112 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LDB3O75112 AC125634.1-201ENST00000438758 1403 ntBASIC16.72■□□□□ 0.27
LDB3O75112 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
LDB3O75112 NSUN5P1-202ENST00000421140 1535 ntBASIC16.72■□□□□ 0.27
LDB3O75112 NSUN5P2-203ENST00000457352 1529 ntBASIC16.72■□□□□ 0.27
LDB3O75112 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LDB3O75112 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.72■□□□□ 0.27
LDB3O75112 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.72■□□□□ 0.27
LDB3O75112 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 MINOS1P3-201ENST00000457048 203 ntBASIC16.72■□□□□ 0.27
LDB3O75112 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.72■□□□□ 0.27
LDB3O75112 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.72■□□□□ 0.27
LDB3O75112 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.72■□□□□ 0.27
LDB3O75112 AC012615.1-201ENST00000565797 1299 ntBASIC16.72■□□□□ 0.27
LDB3O75112 AL138831.2-201ENST00000606564 490 ntBASIC16.72■□□□□ 0.27
LDB3O75112 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.72■□□□□ 0.27
LDB3O75112 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
LDB3O75112 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LDB3O75112 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LDB3O75112 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
LDB3O75112 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LDB3O75112 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.71■□□□□ 0.27
LDB3O75112 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
LDB3O75112 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LDB3O75112 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
LDB3O75112 IGHV3-47-201ENST00000425060 335 ntBASIC16.71■□□□□ 0.27
LDB3O75112 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
LDB3O75112 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.71■□□□□ 0.27
LDB3O75112 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.71■□□□□ 0.27
LDB3O75112 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.71■□□□□ 0.27
LDB3O75112 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LDB3O75112 AC010460.3-201ENST00000511359 1579 ntBASIC16.71■□□□□ 0.27
LDB3O75112 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LDB3O75112 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.71■□□□□ 0.27
LDB3O75112 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.71■□□□□ 0.27
LDB3O75112 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
LDB3O75112 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LDB3O75112 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.7■□□□□ 0.26
LDB3O75112 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LDB3O75112 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
LDB3O75112 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 AC096633.1-201ENST00000422446 749 ntBASIC16.7■□□□□ 0.26
LDB3O75112 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.7■□□□□ 0.26
LDB3O75112 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.7■□□□□ 0.26
LDB3O75112 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
LDB3O75112 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB3O75112 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LDB3O75112 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms