Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AL049757.1-201ENST00000616842 1596 ntBASIC18.56■□□□□ 0.56
USP3Q9Y6I4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AC079781.3-201ENST00000449110 356 ntBASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AL121912.1-201ENST00000603683 238 ntBASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AL031008.1-201ENST00000619963 541 ntBASIC18.56■□□□□ 0.56
USP3Q9Y6I4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 AC005332.8-201ENST00000622750 2735 ntBASIC18.56■□□□□ 0.56
USP3Q9Y6I4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP3Q9Y6I4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 GNAS-203ENST00000306120 1878 ntBASIC18.55■□□□□ 0.56
USP3Q9Y6I4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 AL355877.3-201ENST00000622820 899 ntBASIC18.55■□□□□ 0.56
USP3Q9Y6I4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 PMPCAP1-201ENST00000508114 1576 ntBASIC18.55■□□□□ 0.56
USP3Q9Y6I4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP3Q9Y6I4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 PCDHB18P-201ENST00000524813 2368 ntBASIC18.54■□□□□ 0.56
USP3Q9Y6I4 AL353593.2-201ENST00000602529 1483 ntBASIC18.54■□□□□ 0.56
USP3Q9Y6I4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 AC019129.2-201ENST00000609837 1235 ntBASIC18.54■□□□□ 0.56
USP3Q9Y6I4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
USP3Q9Y6I4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 SIRPAP1-201ENST00000448467 1770 ntBASIC18.53■□□□□ 0.56
USP3Q9Y6I4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms