Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 RN7SL510P-201ENST00000581311 263 ntBASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 HTR7P1-202ENST00000624664 4411 ntBASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A3BPQ9Y5P4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A3BPQ9Y5P4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
COL4A3BPQ9Y5P4 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A3BPQ9Y5P4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A3BPQ9Y5P4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A3BPQ9Y5P4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A3BPQ9Y5P4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 AC005336.2-201ENST00000593183 939 ntBASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL4A3BPQ9Y5P4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 BNIP3P18-201ENST00000593976 575 ntBASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A3BPQ9Y5P4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A3BPQ9Y5P4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A3BPQ9Y5P4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A3BPQ9Y5P4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A3BPQ9Y5P4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A3BPQ9Y5P4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms