Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 AP005117.1-201ENST00000584346 1413 ntBASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN16Q9Y5I7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 AC104692.2-201ENST00000603054 253 ntBASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN16Q9Y5I7 AC132938.5-201ENST00000624980 1813 ntBASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AC079781.3-201ENST00000449110 356 ntBASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 SAPCD2P3-201ENST00000455031 850 ntBASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AC002558.1-201ENST00000488906 803 ntBASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AL121894.2-201ENST00000602977 491 ntBASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLDN16Q9Y5I7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 FGFR3P6-201ENST00000457012 610 ntBASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 AC109462.3-201ENST00000573934 613 ntBASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 AL355877.3-201ENST00000622820 899 ntBASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 LINC01451-201ENST00000623792 534 ntBASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLDN16Q9Y5I7 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms