Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 SCARNA2-201ENST00000458748 420 ntBASIC18.77■□□□□ 0.6
CDH9Q9ULB4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 SIRPAP1-201ENST00000448467 1770 ntBASIC18.77■□□□□ 0.6
CDH9Q9ULB4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDH9Q9ULB4 PMPCAP1-201ENST00000508114 1576 ntBASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 FAM197Y8-203ENST00000450145 560 ntBASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 AL049757.1-201ENST00000616842 1596 ntBASIC18.76■□□□□ 0.59
CDH9Q9ULB4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH9Q9ULB4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 SLC25A6P5-201ENST00000435663 894 ntBASIC18.75■□□□□ 0.59
CDH9Q9ULB4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 AL662844.1-201ENST00000546340 181 ntBASIC18.75■□□□□ 0.59
CDH9Q9ULB4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 AC064862.7-201ENST00000604520 867 ntBASIC18.75■□□□□ 0.59
CDH9Q9ULB4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 AL353593.2-201ENST00000602529 1483 ntBASIC18.75■□□□□ 0.59
CDH9Q9ULB4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CDH9Q9ULB4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 AL356309.3-201ENST00000624132 1934 ntBASIC18.74■□□□□ 0.59
CDH9Q9ULB4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDH9Q9ULB4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms