Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LHX3Q9UBR4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LHX3Q9UBR4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LHX3Q9UBR4 RNF165-205ENST00000588679 2904 ntBASIC17.89■□□□□ 0.46
LHX3Q9UBR4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 AL049757.1-201ENST00000616842 1596 ntBASIC17.89■□□□□ 0.45
LHX3Q9UBR4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 AC103564.2-201ENST00000432853 1299 ntBASIC17.89■□□□□ 0.45
LHX3Q9UBR4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 AF238378.1-201ENST00000526806 358 ntBASIC17.89■□□□□ 0.45
LHX3Q9UBR4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 AD001527.2-201ENST00000622994 785 ntBASIC17.89■□□□□ 0.45
LHX3Q9UBR4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX3Q9UBR4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 AC005104.2-201ENST00000427818 678 ntBASIC17.88■□□□□ 0.45
LHX3Q9UBR4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 AC106795.1-205ENST00000512851 1056 ntBASIC17.88■□□□□ 0.45
LHX3Q9UBR4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 AP000867.4-201ENST00000641616 219 ntBASIC17.88■□□□□ 0.45
LHX3Q9UBR4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 KRT8P10-201ENST00000450021 1447 ntBASIC17.88■□□□□ 0.45
LHX3Q9UBR4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LHX3Q9UBR4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AC018470.1-201ENST00000624790 3129 ntBASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AC004870.1-201ENST00000315132 882 ntBASIC17.87■□□□□ 0.45
LHX3Q9UBR4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AC079781.3-201ENST00000449110 356 ntBASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AC109462.3-201ENST00000573934 613 ntBASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AP005117.1-201ENST00000584346 1413 ntBASIC17.87■□□□□ 0.45
LHX3Q9UBR4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AL353593.2-201ENST00000602529 1483 ntBASIC17.87■□□□□ 0.45
LHX3Q9UBR4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LHX3Q9UBR4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 LINC00304-203ENST00000565008 1864 ntBASIC17.86■□□□□ 0.45
LHX3Q9UBR4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms