Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 MIR1224-201ENST00000408193 85 ntBASIC18.38■□□□□ 0.53
PCDH9Q9HC56 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 ZNF444P1-201ENST00000559497 298 ntBASIC18.38■□□□□ 0.53
PCDH9Q9HC56 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 AC009053.2-201ENST00000563701 2365 ntBASIC18.38■□□□□ 0.53
PCDH9Q9HC56 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 AL031133.1-201ENST00000406807 723 ntBASIC18.37■□□□□ 0.53
PCDH9Q9HC56 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 AC010331.1-201ENST00000611423 582 ntBASIC18.37■□□□□ 0.53
PCDH9Q9HC56 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 AC009949.1-201ENST00000623048 1830 ntBASIC18.37■□□□□ 0.53
PCDH9Q9HC56 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PCDH9Q9HC56 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 MIR662-201ENST00000384847 95 ntBASIC18.36■□□□□ 0.53
PCDH9Q9HC56 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 CROCCP2-202ENST00000412962 2773 ntBASIC18.36■□□□□ 0.53
PCDH9Q9HC56 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 KRT18P48-201ENST00000434763 852 ntBASIC18.36■□□□□ 0.53
PCDH9Q9HC56 SPDYE13P-201ENST00000445314 798 ntBASIC18.36■□□□□ 0.53
PCDH9Q9HC56 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms