Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.2■□□□□ 0.82
ERCC4Q92889 DUTP2-201ENST00000519164 463 ntBASIC20.2■□□□□ 0.82
ERCC4Q92889 NAPSB-206ENST00000562112 1266 ntBASIC20.2■□□□□ 0.82
ERCC4Q92889 AC009065.1-201ENST00000564055 1225 ntBASIC20.2■□□□□ 0.82
ERCC4Q92889 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.2■□□□□ 0.82
ERCC4Q92889 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.2■□□□□ 0.82
ERCC4Q92889 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 AD000864.1-201ENST00000624076 2295 ntBASIC20.2■□□□□ 0.82
ERCC4Q92889 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
ERCC4Q92889 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ERCC4Q92889 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.2■□□□□ 0.82
ERCC4Q92889 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.19■□□□□ 0.82
ERCC4Q92889 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ERCC4Q92889 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
ERCC4Q92889 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 MIR3917-201ENST00000580971 93 ntBASIC20.19■□□□□ 0.82
ERCC4Q92889 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ERCC4Q92889 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
ERCC4Q92889 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ERCC4Q92889 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.19■□□□□ 0.82
ERCC4Q92889 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
ERCC4Q92889 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.18■□□□□ 0.82
ERCC4Q92889 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.18■□□□□ 0.82
ERCC4Q92889 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.18■□□□□ 0.82
ERCC4Q92889 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.18■□□□□ 0.82
ERCC4Q92889 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 AC009949.1-201ENST00000623048 1830 ntBASIC20.18■□□□□ 0.82
ERCC4Q92889 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.18■□□□□ 0.82
ERCC4Q92889 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ERCC4Q92889 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.17■□□□□ 0.82
ERCC4Q92889 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 MMP23A-201ENST00000234610 1017 ntBASIC20.17■□□□□ 0.82
ERCC4Q92889 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.17■□□□□ 0.82
ERCC4Q92889 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.17■□□□□ 0.82
ERCC4Q92889 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.17■□□□□ 0.82
ERCC4Q92889 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC4Q92889 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.17■□□□□ 0.82
ERCC4Q92889 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC4Q92889 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.17■□□□□ 0.82
ERCC4Q92889 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
ERCC4Q92889 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.17■□□□□ 0.82
ERCC4Q92889 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ERCC4Q92889 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms