Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 AC020763.4-201ENST00000623414 4170 ntBASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 AC139530.3-201ENST00000620344 690 ntBASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 AL138688.1-201ENST00000624851 1594 ntBASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHROOM3Q8TF72 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 LINC00265-3P-201ENST00000447588 903 ntBASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.1■□□□□ 0.49
SHROOM3Q8TF72 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 AC009078.2-202ENST00000463353 338 ntBASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 RN7SL606P-201ENST00000472779 293 ntBASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 AC011498.5-201ENST00000592027 486 ntBASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 SIRPAP1-201ENST00000448467 1770 ntBASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM3Q8TF72 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms