Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
USP48Q86UV5 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.79■■□□□ 1.08
USP48Q86UV5 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
USP48Q86UV5 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USP48Q86UV5 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
USP48Q86UV5 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC21.78■■□□□ 1.08
USP48Q86UV5 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC21.78■■□□□ 1.08
USP48Q86UV5 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.78■■□□□ 1.08
USP48Q86UV5 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.78■■□□□ 1.08
USP48Q86UV5 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USP48Q86UV5 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.78■■□□□ 1.08
USP48Q86UV5 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
USP48Q86UV5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.77■■□□□ 1.08
USP48Q86UV5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USP48Q86UV5 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.77■■□□□ 1.08
USP48Q86UV5 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USP48Q86UV5 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 AL591424.1-201ENST00000442569 1213 ntBASIC21.77■■□□□ 1.08
USP48Q86UV5 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC21.77■■□□□ 1.08
USP48Q86UV5 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC21.77■■□□□ 1.08
USP48Q86UV5 SART3-203ENST00000546611 1184 ntBASIC21.77■■□□□ 1.08
USP48Q86UV5 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.77■■□□□ 1.08
USP48Q86UV5 AC012640.2-201ENST00000561606 901 ntBASIC21.77■■□□□ 1.08
USP48Q86UV5 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.77■■□□□ 1.08
USP48Q86UV5 AL357033.4-201ENST00000617703 1807 ntBASIC21.77■■□□□ 1.08
USP48Q86UV5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
USP48Q86UV5 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
USP48Q86UV5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP48Q86UV5 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
USP48Q86UV5 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
USP48Q86UV5 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.07
USP48Q86UV5 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
USP48Q86UV5 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
USP48Q86UV5 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
USP48Q86UV5 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
USP48Q86UV5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.76■■□□□ 1.07
USP48Q86UV5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.76■■□□□ 1.07
USP48Q86UV5 RNA5SP415-201ENST00000517246 115 ntBASIC21.76■■□□□ 1.07
USP48Q86UV5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.76■■□□□ 1.07
USP48Q86UV5 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
USP48Q86UV5 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
USP48Q86UV5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.76■■□□□ 1.07
USP48Q86UV5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
USP48Q86UV5 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.76■■□□□ 1.07
USP48Q86UV5 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.76■■□□□ 1.07
USP48Q86UV5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP48Q86UV5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
USP48Q86UV5 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.75■■□□□ 1.07
USP48Q86UV5 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.75■■□□□ 1.07
USP48Q86UV5 AC112777.1-201ENST00000540175 1423 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
USP48Q86UV5 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms