Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
KRT39Q6A163 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.21■□□□□ 0.67
KRT39Q6A163 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 AP002383.4-201ENST00000442518 975 ntBASIC19.21■□□□□ 0.67
KRT39Q6A163 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.21■□□□□ 0.67
KRT39Q6A163 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.21■□□□□ 0.67
KRT39Q6A163 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.21■□□□□ 0.67
KRT39Q6A163 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.21■□□□□ 0.67
KRT39Q6A163 REXO1L11P-201ENST00000620964 1927 ntBASIC19.21■□□□□ 0.67
KRT39Q6A163 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
KRT39Q6A163 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.21■□□□□ 0.67
KRT39Q6A163 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
KRT39Q6A163 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.2■□□□□ 0.66
KRT39Q6A163 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.2■□□□□ 0.66
KRT39Q6A163 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
KRT39Q6A163 LINC00304-203ENST00000565008 1864 ntBASIC19.2■□□□□ 0.66
KRT39Q6A163 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
KRT39Q6A163 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
KRT39Q6A163 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
KRT39Q6A163 AC125634.1-201ENST00000438758 1403 ntBASIC19.2■□□□□ 0.66
KRT39Q6A163 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.2■□□□□ 0.66
KRT39Q6A163 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
KRT39Q6A163 DRAXINP1-201ENST00000437611 948 ntBASIC19.2■□□□□ 0.66
KRT39Q6A163 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 AC005336.2-201ENST00000593183 939 ntBASIC19.2■□□□□ 0.66
KRT39Q6A163 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.2■□□□□ 0.66
KRT39Q6A163 AC069148.1-201ENST00000608741 768 ntBASIC19.2■□□□□ 0.66
KRT39Q6A163 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.2■□□□□ 0.66
KRT39Q6A163 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 AC133963.1-201ENST00000504166 1679 ntBASIC19.2■□□□□ 0.66
KRT39Q6A163 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.2■□□□□ 0.66
KRT39Q6A163 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
KRT39Q6A163 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
KRT39Q6A163 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.19■□□□□ 0.66
KRT39Q6A163 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
KRT39Q6A163 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.19■□□□□ 0.66
KRT39Q6A163 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.19■□□□□ 0.66
KRT39Q6A163 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 VENTXP7-201ENST00000475503 772 ntBASIC19.19■□□□□ 0.66
KRT39Q6A163 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.19■□□□□ 0.66
KRT39Q6A163 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.19■□□□□ 0.66
KRT39Q6A163 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
KRT39Q6A163 AP002414.4-201ENST00000589764 1148 ntBASIC19.19■□□□□ 0.66
KRT39Q6A163 AL138831.2-201ENST00000606564 490 ntBASIC19.19■□□□□ 0.66
KRT39Q6A163 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.19■□□□□ 0.66
KRT39Q6A163 LINC01451-201ENST00000623792 534 ntBASIC19.19■□□□□ 0.66
KRT39Q6A163 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
KRT39Q6A163 AC010460.3-201ENST00000511359 1579 ntBASIC19.19■□□□□ 0.66
KRT39Q6A163 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
KRT39Q6A163 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
KRT39Q6A163 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.18■□□□□ 0.66
KRT39Q6A163 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.18■□□□□ 0.66
KRT39Q6A163 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.18■□□□□ 0.66
KRT39Q6A163 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.18■□□□□ 0.66
KRT39Q6A163 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
KRT39Q6A163 TPSP2-201ENST00000561760 610 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms