Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SF3A1Q15459 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SF3A1Q15459 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SF3A1Q15459 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
SF3A1Q15459 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SF3A1Q15459 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.57■□□□□ 0.88
SF3A1Q15459 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.56■□□□□ 0.88
SF3A1Q15459 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
SF3A1Q15459 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.56■□□□□ 0.88
SF3A1Q15459 AC113404.2-201ENST00000507884 177 ntBASIC20.56■□□□□ 0.88
SF3A1Q15459 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.56■□□□□ 0.88
SF3A1Q15459 AC139887.4-201ENST00000607877 719 ntBASIC20.56■□□□□ 0.88
SF3A1Q15459 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SF3A1Q15459 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SF3A1Q15459 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.56■□□□□ 0.88
SF3A1Q15459 AL031432.5-201ENST00000641059 760 ntBASIC20.56■□□□□ 0.88
SF3A1Q15459 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
SF3A1Q15459 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SF3A1Q15459 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.56■□□□□ 0.88
SF3A1Q15459 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.55■□□□□ 0.88
SF3A1Q15459 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 AL355312.1-201ENST00000407115 2176 ntBASIC20.55■□□□□ 0.88
SF3A1Q15459 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.55■□□□□ 0.88
SF3A1Q15459 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 AC024563.2-201ENST00000603282 481 ntBASIC20.55■□□□□ 0.88
SF3A1Q15459 AL136038.4-201ENST00000603606 1261 ntBASIC20.55■□□□□ 0.88
SF3A1Q15459 AC139713.2-201ENST00000641328 2723 ntBASIC20.55■□□□□ 0.88
SF3A1Q15459 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.55■□□□□ 0.88
SF3A1Q15459 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SF3A1Q15459 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SF3A1Q15459 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 AC005521.1-201ENST00000393351 872 ntBASIC20.54■□□□□ 0.88
SF3A1Q15459 AC117947.1-201ENST00000427448 529 ntBASIC20.54■□□□□ 0.88
SF3A1Q15459 BX664615.1-201ENST00000443558 458 ntBASIC20.54■□□□□ 0.88
SF3A1Q15459 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.54■□□□□ 0.88
SF3A1Q15459 YBX1P2-201ENST00000489612 999 ntBASIC20.54■□□□□ 0.88
SF3A1Q15459 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.54■□□□□ 0.88
SF3A1Q15459 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SF3A1Q15459 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.54■□□□□ 0.88
SF3A1Q15459 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SF3A1Q15459 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SF3A1Q15459 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SF3A1Q15459 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SF3A1Q15459 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SF3A1Q15459 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SF3A1Q15459 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
SF3A1Q15459 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms